Nerds Without Borders - User contributions [en]

Turtle Sense

2014-08-20T11:36:48Z

Eric:

== '''[[Turtle Sense donations|You can help support the project with a tax deductable donation.]]''' ==

;Using high tech sensors and cell phone networks to protect sea turtle hatchlings

[[File:HIOC turtle sense logo.jpg|200px|left]]
==Background==
[[File:Hawaii turtle 2.JPG|400px|right]]
Sea turtles have existed for 100 million years, but in the last century the impacts of man through accidental capture in fishing nets, habitat destruction, pollution, and plastics in the ocean, have significantly reduced populations by as much as 95%. Six of the seven species nest in the warmer beaches of the US, and all these are protected by the Endangered Species Act of 1973. Although volunteer groups and park personnel can identify egg laying sites almost immediately, the hatching date (when they emerge on the beach) cannot be predicted—it will happen sometime in a 6 week period beginning 50 days after the eggs are laid. All 100 to 150 of the sea turtle hatchlings in a nest appear simultaneously (usually at night) on that unpredictable date during that 6-week period. The hatchlings “boil” out of the sand, and begin a dash to the ocean, one of the most touching sights in nature.

Beginning at 50 days after the eggs are laid, the National Park Service (NPS) at the Cape Hatteras National Seashore fence off a lane from the nest to the ocean and forbids other access to that lane until either the hatchlings appear or the 100 days has elapsed. This long protection period creates conflicts with other uses for ocean access, such as fishing and vehicular movement for recreation and safety. These conflicts are inevitable, often leading to lawsuits.

== Project objective==
[[File:Baby sea turtles make their way toward the water.jpg|thumb|400px|left|This project is developing technology to help protect sea turtle hatchlings at their first crisis: emerging from the egg and making it to the ocean. Hatching happens on an unpredictable day sometime during a 6-week window beginning 50 days after the eggs were laid. Predicting the hatching date to within a few days is the goal of this project.]]
The goal of the project is to develop a simple inexpensive technology for determining when a boil will occur with as much accuracy and reliability as possible. The current design employs a sensor which measure egg motion either as the embryos agitate in the egg or as the sea turtle hatchlings begin to pip out of the eggs or both. The results, perhaps including modeling, will hopefully be able to predict hatching dates (arrival on the beach) to a reliable 1 to 3 day window, a significant improvement over the current 6-week window. Developing a reliable technology for predicting hatching will allow the NPS to create a new protocol for protecting the nests, thus freeing up access to the beaches for a significantly longer time.

There are several possible beneficial side effects of the technology. The technology can be used to help develop ecotourism around the hatching of sea turtles. Once people (especially young people) experience the hatching of these creatures, they may be much more likely to think positively about the welfare of sea turtles in the future. If local people can develop an income around this ecotourism activity, they may be less adverse to the obstructions to beach vehicles. The technology might be useful for scientists studying sea turtles, and might be adaptable for the study of other egg-laying species.

== History ==
The device began with an idea from Eric Kaplan, Founder of a company which developed Bluetooth wireless technology test equipment. Kaplan sold his company to his employees and founded the Hatteras Island Ocean Center (www.hioceancenter.org), a nonprofit, 501(c)(3) ecology education center on Hatteras Island, NC. Kaplan saw the need for this technology and approached his childhood friend Tom Zimmerman, an IBM Research–Almaden (San Jose, CA) electrical engineer for assistance. Zimmerman designed the sensor package in 2013 as a public service commitment from IBM. Tom recruited his college buddy, Samuel Wantman a retired software designer, and they worked on developing the first phase of the design with support from IBM and from the National Park Service. Britta Muiznieks, a Biologist with the NPS has been coordinating the Parks involvement. The first phase of the project was a very quick and inexpensive hack of cell phones with a simple custom circuit board to test the viability of the project. The devices were tried in a few nests in 2013, but unfortunately it was too late in the season to get any data from viable nests. Even so, there was enough learned to make everyone believe that there was the potential to make the technology work.

Wantman took over management of the project in 2014 as Zimmerman had to return to other commitments at IBM. Additional volunteers were recruited, including David Hermeyer a retired electrical engineer and Charles Wade a retired IBM Research manager. Phase two of the project involves developing a more robust custom sensor embedded in a plastic sphere the same size as a turtle egg, with industry standard technology for transmitting data over cell phone networks. Installation has begun on multiple sensors that the NPS is funding for field testing in 2014. The project inspired Samuel Wantman to start Nerdswithoutborders.net to help organize the project, recruit volunteers, and inspire other projects. All of the Turtle Sense project members, with the exception of the NPS employees, donate their time. The Hatteras Island Ocean Center is the sponsoring non-profit institution -- administering the receiving and disbursement of funds for materials and other expenses.

==Phase One description==
[[file:PingPongSensor.jpg|right|thumb|300px|A ping-pong ball sensor assembly placed in a sea turtle nest (field tests 2013). The cable coming from the sensor leads to the communications tower for the cell phone connection.]]
For phase one, a motion and temperature sensor sealed in a ping-pong ball was placed in the sea turtle nest. It was connected to a hacked cell phone which was programmed with a very small low-powered microprocessor to send out text messages with the motion and temperature data. Turtle eggshells are thick and leathery, so the hatchlings need considerable effort to emerge from the egg. After leaving the egg, the hatchlings remain in the nest for 2-4 days before exiting as a group onto the beach. All the resulting motions should activate the accelerometer sensor and thus provide data to the phone network. Field tests done at Hatteras in 2013 were positive. The tests were done at the end of the nesting season, and unfortunately the eggs did not hatch. However, the signal from a single surviving hatchling was eight times larger than the background signal, giving hope for the extensive tests planned for 2014.

==Phase Two description==
''See also: [[Turtle Sense/Phase Two]]

Planning for phase two began during the implementation of Phase one. Samuel Wantman and David Hermeyer began working on the design for a more robust solution in the Fall of 2013. Units were installed by the NPS starting in June of 2014. We hope to install up to 20 sensors and 10 communications units through the Summer of 2014 and hopefully predict some nest hatching beforehand.

Several problems were identified during Phase One that are hopefully being addressed in Phase Two:
*The sensors had reliability problems communicating with the cell phones because of the long distance between the sensor and the microprocessor in the communications unit. This is being addressed two ways. The sensor was mounted on a very small (1 inch by 1 inch) circuit board inside the "egg" that goes in the nest. The board also contains a microprocessor and a RS485 transceiver that allows reliable communication over very long cable lengths.
[[file:PhaseTwoCommBoard.jpg|left|400px|thumb|The 2014 communications assembly contains the circuit board, power supply, a microprocessor, an M2M cell phone board and RS485 transceiver. Inset is a quarter for size reference.]]
*The cell phone, having been designed with a human interface was often unpredictable. Occasionally messages would pop-up prompting a human reply (like a notification that the phone was charging). This made programming the device difficult because all the possible messages and the timing of their appearance are not predictable. At one point the devices stopped working because the cellular service provider required all its users to upload new operating software. An appropriate user response was not possible in field installed pre-programmed units. Because of this problem, we adopted industry standard M2M (Machine to Machine) methods of sending data over a cellular network.
*Text messages and disposable cell phones were not a cost effective way to send large amounts of data. Phase two uses FTP protocols with devices and data plans that have much less expensive data charges.
*Hacked cell phones would be difficult to mass produce so the new design uses off-the-shelf plug-in cell phone boards and custom circuitry that can be mass produced.
*Phase one used single-use D cell alkaline batteries. Phase two uses rechargeable NiMH AA batteries and achieves longer battery life as the package is carefully designed for low energy needs.
*Most of the turtle-specific calculations are now done in the microprocessor embedded with the sensor in the "egg". The communication system is designed so that it can be modified for other sensors.
*The silicone filling the ping-pong balls that housed the sensors in phase one never cured. For phase two we made a casting of a ping-pong ball (which is the same size as a turtle egg), and use it to cast solid polyurethane "eggs" around the sensor circuit boards. The polyurethane is fully set in less than a day, does not out-gas, and is very hard and durable.

==Data==
[[File:Screenshot 2014-07-03 01.jpg|thumb|left|400px|Data from the first report of the 2014 season]]
The Turtle Sense units constantly monitor and analyze motion to create a profile of its magnitude over time. The motion detector measures the change in acceleration (or "jolt") multiple times per second. The magnitude of the jolt is placed on a logarithmic scale divided into 25 different ranges. The ratio between the lower and higher limit of each range is the square root of 2. A counter for each of the different ranges is incremented whenever a jolt reading is in that range. You can think of each counter as a bin. If a magnitude is in range, it is thrown into the bin for that range. After 6 minutes the results are stored in a record along with a temperature and orientation reading and a new set of bins counters is started. By looking at how many readings were in each bin, we can get an idea of what jolts occurred while the bins for that record were being filled. This allows us to compress several thousand readings into approximately 32 bytes of information. We loose precision with all the readings, and the exact sequence, but we suspect that those details are not important. The 240 records created each day give us a very good idea of what is happening in the nest.

There has been some research that indicates that before emerging from the nest in a "boil", turtles that have hatched congregate underground near the top of the nest. It is thought that this motion stimulates the hatching of the turtles that haven't yet emerged. Our sensors, situated at the top of the nest should record some large disturbances when the first turtles emerge. It is our hope that our readings will indicate these early hatchings so that we can predict that a boil is imminent.

The nests with first units installed in the 2014 season should be hatching around mid August. We will be generating algorithms to predict hatching from our data, and refining them to hopefully come up with a reliable process for predicting hatching a few days in advance.

==Funding and Impact==
[[File:NH007-Post Hurr Arthur-exclosure (2) cropped small.jpg|thumb|right|300px|A few days after the first units of Phase II were installed, Hurricane Arthur hit. The units reported regularly before and after the storm without any problems. This picture was taken the day after the storm. Notice how all the text was sandblasted off the sign in the forefront. Cape Hatteras Lighthouse is just behind the dune.]]
The National Park Service has approved funding for testing in the field beginning in June 2014. Labor is being provided by NerdsWithoutBorder.net voluteers. Additional support has come from:
* [http://ibm.com IBM -- a grant]
* [http://www.janus-rc.com/ Janus Remote Communications -- a generous discount on their M2M plug-in boards]
* [http://www.screamingcircuits.com/ Screaming Ciruits -- a donation of the labor towards the production of circuit prototypes]
* [http://www.telit.com Telit -- publicity]
* [http://www.fte.com Frontline Test Equipment, Inc -- a donation of communications testing equipment]
* [http://www.bhic.org Bald Head Island Conservancy -- funding for units at a second test location]

If the tests are successful, we will seek funding and volunteers to expand the program.

Success in this project would provide widespread, international advantages. As noted above, the stress could be lessened between the protection agencies and the desire for more ocean access by the fishing industry, recreational activities, and tourism advocates. More effective international protection will be available since the protection resources can be concentrated close to the hatch date, instead of being stretched over 6 weeks. With a tighter hatching schedule, the public would have the opportunity to observe the hatchlings heading for the sea, an observation available only randomly now. This would improve the public support of the turtles. NPS will utilize the hatch dates in on-site announcements and information centers, and the Hatteras Island Ocean Center will utilize the information in their programs. Much of the research on sea turtle eggs and hatchlings in the world could benefit from predictions of the hatch date. For example, studies which require capturing hatchlings for research could be done with much greater efficiency. The sensor/cell network could be adapted for measurements of other species, including birds. Given its modest cost and energy efficiency (long battery life) it may have other uses in environmental studies. All the design information will be available to the public on the wiki http://nerdswithoutborders.net. If the project is successful, it is the intent to make these available in the future at close to cost or less if sponsors come forward.

'''[[Turtle Sense donations|You can help support the project with a tax deductable donation.]]'''
[[Image:Britta2013.jpg|left|300px|thumb|Britta Muiznieks, a wildlife biologist at the NPS Cape Hatteras Seashore in NC with a protected turtle nest. The 4" PVC pipe assembly tower was used in the 2013 testing. A smaller 3" structure holds the 2014 package because the electronics are smaller and AA rechargeable batteries have replaced D cells. Vandal proofing is one aspect of the design. Britta does the field research along with Eric Frey of NPS.]]

==Press==
* [http://hamptonroads.com/2014/08/plan-hatched-could-help-keep-beaches-open Article at PilotOnline.com (Virginia-Pilot) (August 2014)]
* [http://www.nextgov.com/emerging-tech/2014/08/remote-sensors-mean-more-sea-turtles-fewer-beach-closures-hatteras/90545/ Article at nextgov.com]
* [http://outerbanksvoice.com/2013/08/29/high-tech-could-help-predict-sea-turtle-hatches/ Article in Outer Banks Voice (August 2013)]
* [http://outerbanksvoice.com/2014/08/10/small-ocean-center-incorporates-an-expansive-natural-theater/ Another mention at the Outer Banks Voice (August 2014)]
* [http://online.wsj.com/article/PR-CO-20140515-910765.html Telit press release in the Wall Street Journal (May 2014)]
* [http://www.iotworld.com/author.asp?section_id=3153&doc_id=563269 Blog at iotworld.com]
* [http://hackaday.com/page/8/ Blog at hackaday.com]

==Links==
*[http://www.hioceancenter.org/ Hatteras Island Ocean Center website]
*[[Turtle Sense/Work]] The main page for organizing work on the project.
*[[Turtle Sense/People]] -- People involved in this project. If you would like to help with this project, make suggestions, or offer a critique, please email admin@nerdswithoutborders.net.

Turtle Sense

2014-08-10T11:38:34Z

Eric:

;Using high tech sensors and cell phone networks to protect sea turtle hatchlings

'''[[Turtle Sense donations|You can help support the project with a tax deductable donation.]]'''

[[File:HIOC turtle sense logo.jpg|200px|left]]
==Background==
[[File:Hawaii turtle 2.JPG|400px|right]]
Sea turtles have existed for 100 million years, but in the last century the impacts of man through accidental capture in fishing nets, habitat destruction, pollution, and plastics in the ocean, have significantly reduced populations by as much as 95%. Six of the seven species nest in the warmer beaches of the US, and all these are protected by the Endangered Species Act of 1973. Although volunteer groups and park personnel can identify egg laying sites almost immediately, the hatching date (when they emerge on the beach) cannot be predicted—it will happen sometime in a 6 week period beginning 50 days after the eggs are laid. All 100 to 150 of the sea turtle hatchlings in a nest appear simultaneously (usually at night) on that unpredictable date during that 6-week period. The hatchlings “boil” out of the sand, and begin a dash to the ocean, one of the most touching sights in nature.

Beginning at 50 days after the eggs are laid, the National Park Service (NPS) at the Cape Hatteras National Seashore fence off a lane from the nest to the ocean and forbids other access to that lane until either the hatchlings appear or the 100 days has elapsed. This long protection period creates conflicts with other uses for ocean access, such as fishing and vehicular movement for recreation and safety. These conflicts are inevitable, often leading to lawsuits.

== Project objective==
[[File:Baby sea turtles make their way toward the water.jpg|thumb|400px|left|This project is developing technology to help protect sea turtle hatchlings at their first crisis: emerging from the egg and making it to the ocean. Hatching happens on an unpredictable day sometime during a 6-week window beginning 50 days after the eggs were laid. Predicting the hatching date to within a few days is the goal of this project.]]
The goal of the project is to develop a simple inexpensive technology for determining when a boil will occur with as much accuracy and reliability as possible. The current design employs a sensor which measure egg motion either as the embryos agitate in the egg or as the sea turtle hatchlings begin to pip out of the eggs or both. The results, perhaps including modeling, will hopefully be able to predict hatching dates (arrival on the beach) to a reliable 1 to 3 day window, a significant improvement over the current 6-week window. Developing a reliable technology for predicting hatching will allow the NPS to create a new protocol for protecting the nests, thus freeing up access to the beaches for a significantly longer time.

There are several possible beneficial side effects of the technology. The technology can be used to help develop ecotourism around the hatching of sea turtles. Once people (especially young people) experience the hatching of these creatures, they may be much more likely to think positively about the welfare of sea turtles in the future. If local people can develop an income around this ecotourism activity, they may be less adverse to the obstructions to beach vehicles. The technology might be useful for scientists studying sea turtles, and might be adaptable for the study of other egg-laying species.

== History ==
The device began with an idea from Eric Kaplan, Founder of a company which developed Bluetooth wireless technology test equipment. Kaplan sold his company to his employees and founded the Hatteras Island Ocean Center (www.hioceancenter.org), a nonprofit, 501(c)(3) ecology education center on Hatteras Island, NC. Kaplan saw the need for this technology and approached his childhood friend Tom Zimmerman, an IBM Research–Almaden (San Jose, CA) electrical engineer for assistance. Zimmerman designed the sensor package in 2013 as a public service commitment from IBM. Tom recruited his college buddy, Samuel Wantman a retired software designer, and they worked on developing the first phase of the design with support from IBM and from the National Park Service. Britta Muiznieks, a Biologist with the NPS has been coordinating the Parks involvement. The first phase of the project was a very quick and inexpensive hack of cell phones with a simple custom circuit board to test the viability of the project. The devices were tried in a few nests in 2013, but unfortunately it was too late in the season to get any data from viable nests. Even so, there was enough learned to make everyone believe that there was the potential to make the technology work.

Wantman took over management of the project in 2014 as Zimmerman had to return to other commitments at IBM. Additional volunteers were recruited, including David Hermeyer a retired electrical engineer and Charles Wade a retired IBM Research manager. Phase two of the project involves developing a more robust custom sensor embedded in a plastic sphere the same size as a turtle egg, with industry standard technology for transmitting data over cell phone networks. Installation has begun on multiple sensors that the NPS is funding for field testing in 2014. The project inspired Samuel Wantman to start Nerdswithoutborders.net to help organize the project, recruit volunteers, and inspire other projects. All of the Turtle Sense project members, with the exception of the NPS employees, donate their time. The Hatteras Island Ocean Center is the sponsoring non-profit institution -- administering the receiving and disbursement of funds for materials and other expenses.

==Phase One description==
[[file:PingPongSensor.jpg|right|thumb|300px|A ping-pong ball sensor assembly placed in a sea turtle nest (field tests 2013). The cable coming from the sensor leads to the communications tower for the cell phone connection.]]
For phase one, a motion and temperature sensor sealed in a ping-pong ball was placed in the sea turtle nest. It was connected to a hacked cell phone which was programmed with a very small low-powered microprocessor to send out text messages with the motion and temperature data. Turtle eggshells are thick and leathery, so the hatchlings need considerable effort to emerge from the egg. After leaving the egg, the hatchlings remain in the nest for 2-4 days before exiting as a group onto the beach. All the resulting motions should activate the accelerometer sensor and thus provide data to the phone network. Field tests done at Hatteras in 2013 were positive. The tests were done at the end of the nesting season, and unfortunately the eggs did not hatch. However, the signal from a single surviving hatchling was eight times larger than the background signal, giving hope for the extensive tests planned for 2014.

==Phase Two description==
''See also: [[Turtle Sense/Phase Two]]

Planning for phase two began during the implementation of Phase one. Samuel Wantman and David Hermeyer began working on the design for a more robust solution in the Fall of 2013. Units were installed by the NPS starting in June of 2014. We hope to install up to 20 sensors and 10 communications units through the Summer of 2014 and hopefully predict some nest hatching beforehand.

Several problems were identified during Phase One that are hopefully being addressed in Phase Two:
*The sensors had reliability problems communicating with the cell phones because of the long distance between the sensor and the microprocessor in the communications unit. This is being addressed two ways. The sensor was mounted on a very small (1 inch by 1 inch) circuit board inside the "egg" that goes in the nest. The board also contains a microprocessor and a RS485 transceiver that allows reliable communication over very long cable lengths.
[[file:PhaseTwoCommBoard.jpg|left|400px|thumb|The 2014 communications assembly contains the circuit board, power supply, a microprocessor, an M2M cell phone board and RS485 transceiver. Inset is a quarter for size reference.]]
*The cell phone, having been designed with a human interface was often unpredictable. Occasionally messages would pop-up prompting a human reply (like a notification that the phone was charging). This made programming the device difficult because all the possible messages and the timing of their appearance are not predictable. At one point the devices stopped working because the cellular service provider required all its users to upload new operating software. An appropriate user response was not possible in field installed pre-programmed units. Because of this problem, we adopted industry standard M2M (Machine to Machine) methods of sending data over a cellular network.
*Text messages and disposable cell phones were not a cost effective way to send large amounts of data. Phase two uses FTP protocols with devices and data plans that have much less expensive data charges.
*Hacked cell phones would be difficult to mass produce so the new design uses off-the-shelf plug-in cell phone boards and custom circuitry that can be mass produced.
*Phase one used single-use D cell alkaline batteries. Phase two uses rechargeable NiMH AA batteries and achieves longer battery life as the package is carefully designed for low energy needs.
*Most of the turtle-specific calculations are now done in the microprocessor embedded with the sensor in the "egg". The communication system is designed so that it can be modified for other sensors.
*The silicone filling the ping-pong balls that housed the sensors in phase one never cured. For phase two we made a casting of a ping-pong ball (which is the same size as a turtle egg), and use it to cast solid polyurethane "eggs" around the sensor circuit boards. The polyurethane is fully set in less than a day, does not out-gas, and is very hard and durable.

==Data==
[[File:Screenshot 2014-07-03 01.jpg|thumb|left|400px|Data from the first report of the 2014 season]]
The Turtle Sense units constantly monitor and analyze motion to create a profile of its magnitude over time. The motion detector measures the change in acceleration (or "jolt") multiple times per second. The magnitude of the jolt is placed on a logarithmic scale divided into 25 different ranges. The ratio between the lower and higher limit of each range is the square root of 2. A counter for each of the different ranges is incremented whenever a jolt reading is in that range. You can think of each counter as a bin. If a magnitude is in range, it is thrown into the bin for that range. After 6 minutes the results are stored in a record along with a temperature and orientation reading and a new set of bins counters is started. By looking at how many readings were in each bin, we can get an idea of what jolts occurred while the bins for that record were being filled. This allows us to compress several thousand readings into approximately 32 bytes of information. We loose precision with all the readings, and the exact sequence, but we suspect that those details are not important. The 240 records created each day give us a very good idea of what is happening in the nest.

There has been some research that indicates that before emerging from the nest in a "boil", turtles that have hatched congregate underground near the top of the nest. It is thought that this motion stimulates the hatching of the turtles that haven't yet emerged. Our sensors, situated at the top of the nest should record some large disturbances when the first turtles emerge. It is our hope that our readings will indicate these early hatchings so that we can predict that a boil is imminent.

The nests with first units installed in the 2014 season should be hatching around mid August. We will be generating algorithms to predict hatching from our data, and refining them to hopefully come up with a reliable process for predicting hatching a few days in advance.

==Funding and Impact==
[[File:NH007-Post Hurr Arthur-exclosure (2) cropped small.jpg|thumb|right|300px|A few days after the first units of Phase II were installed, Hurricane Arthur hit. The units reported regularly before and after the storm without any problems. This picture was taken the day after the storm. Notice how all the text was sandblasted off the sign in the forefront. Cape Hatteras Lighthouse is just behind the dune.]]
The National Park Service has approved funding for testing in the field beginning in June 2014. Labor is being provided by NerdsWithoutBorder.net voluteers. Additional support has come from:
* [http://ibm.com IBM -- a grant]
* [http://www.janus-rc.com/ Janus Remote Communications -- a generous discount on their M2M plug-in boards]
* [http://www.screamingcircuits.com/ Screaming Ciruits -- a donation of the labor towards the production of circuit prototypes]
* [http://www.telit.com Telit -- publicity]
* [http://www.fte.com Frontline Test Equipment, Inc -- a donation of communications testing equipment]
* [http://www.bhic.org Bald Head Island Conservancy -- funding for units at a second test location]

If the tests are successful, we will seek funding and volunteers to expand the program.

Success in this project would provide widespread, international advantages. As noted above, the stress could be lessened between the protection agencies and the desire for more ocean access by the fishing industry, recreational activities, and tourism advocates. More effective international protection will be available since the protection resources can be concentrated close to the hatch date, instead of being stretched over 6 weeks. With a tighter hatching schedule, the public would have the opportunity to observe the hatchlings heading for the sea, an observation available only randomly now. This would improve the public support of the turtles. NPS will utilize the hatch dates in on-site announcements and information centers, and the Hatteras Island Ocean Center will utilize the information in their programs. Much of the research on sea turtle eggs and hatchlings in the world could benefit from predictions of the hatch date. For example, studies which require capturing hatchlings for research could be done with much greater efficiency. The sensor/cell network could be adapted for measurements of other species, including birds. Given its modest cost and energy efficiency (long battery life) it may have other uses in environmental studies. All the design information will be available to the public on the wiki http://nerdswithoutborders.net. If the project is successful, it is the intent to make these available in the future at close to cost or less if sponsors come forward.

'''[[Turtle Sense donations|You can help support the project with a tax deductable donation.]]'''
[[Image:Britta2013.jpg|left|300px|thumb|Britta Muiznieks, a wildlife biologist at the NPS Cape Hatteras Seashore in NC with a protected turtle nest. The 4" PVC pipe assembly tower was used in the 2013 testing. A smaller 3" structure holds the 2014 package because the electronics are smaller and AA rechargeable batteries have replaced D cells. Vandal proofing is one aspect of the design. Britta does the field research along with Eric Frey of NPS.]]

==Press==
* [http://outerbanksvoice.com/2013/08/29/high-tech-could-help-predict-sea-turtle-hatches/ Article in Outer Banks Voice (August 2013)]
* [http://online.wsj.com/article/PR-CO-20140515-910765.html Telit press release in the Wall Street Journal (May 2014)]

==Links==
*[http://www.hioceancenter.org/ Hatteras Island Ocean Center website]
*[[Turtle Sense/Work]] The main page for organizing work on the project.
*[[Turtle Sense/People]] -- People involved in this project. If you would like to help with this project, make suggestions, or offer a critique, please email admin@nerdswithoutborders.net.

Turtle Sense

2014-08-10T11:33:27Z

Eric:

Turtle Sense

2014-08-08T10:58:50Z

Eric:

;Using high tech sensors and cell phone networks to protect sea turtle hatchlings
[[File:HIOC turtle sense logo.jpg|200px|left]]
==Background==
[[File:Hawaii turtle 2.JPG|400px|right]]
Sea turtles have existed for 100 million years, but in the last century the impacts of man through accidental capture in fishing nets, habitat destruction, pollution, and plastics in the ocean, have significantly reduced populations by as much as 95%. Six of the seven species nest in the warmer beaches of the US, and all these are protected by the Endangered Species Act of 1973. Although volunteer groups and park personnel can identify egg laying sites almost immediately, the hatching date (when they emerge on the beach) cannot be predicted—it will happen sometime in a 6 week period beginning 50 days after the eggs are laid. All 100 to 150 of the sea turtle hatchlings in a nest appear simultaneously (usually at night) on that unpredictable date during that 6-week period. The hatchlings “boil” out of the sand, and begin a dash to the ocean, one of the most touching sights in nature.

Beginning at 50 days after the eggs are laid, the National Park Service (NPS) at the Cape Hatteras National Seashore fence off a lane from the nest to the ocean and forbids other access to that lane until either the hatchlings appear or the 100 days has elapsed. This long protection period creates conflicts with other uses for ocean access, such as fishing and vehicular movement for recreation and safety. These conflicts are inevitable, often leading to lawsuits.

== Project objective==
[[File:Baby sea turtles make their way toward the water.jpg|thumb|400px|left|This project is developing technology to help protect sea turtle hatchlings at their first crisis: emerging from the egg and making it to the ocean. Hatching happens on an unpredictable day sometime during a 6-week window beginning 50 days after the eggs were laid. Predicting the hatching date to within a few days is the goal of this project.]]
The goal of the project is to develop a simple inexpensive technology for determining when a boil will occur with as much accuracy and reliability as possible. The current design employs a sensor which measure egg motion either as the embryos agitate in the egg or as the sea turtle hatchlings begin to pip out of the eggs or both. The results, perhaps including modeling, will hopefully be able to predict hatching dates (arrival on the beach) to a reliable 1 to 3 day window, a significant improvement over the current 6-week window. Developing a reliable technology for predicting hatching will allow the NPS to create a new protocol for protecting the nests, thus freeing up access to the beaches for a significantly longer time.

There are several possible beneficial side effects of the technology. The technology can be used to help develop ecotourism around the hatching of sea turtles. Once people (especially young people) experience the hatching of these creatures, they may be much more likely to think positively about the welfare of sea turtles in the future. If local people can develop an income around this ecotourism activity, they may be less adverse to the obstructions to beach vehicles. The technology might be useful for scientists studying sea turtles, and might be adaptable for the study of other egg-laying species.

== History ==
The device began with an idea from Eric Kaplan, Founder of a company which developed Bluetooth wireless technology test equipment. Kaplan sold his company to his employees and founded the Hatteras Island Ocean Center (www.hioceancenter.org), a nonprofit, 501(c)(3) ecology education center on Hatteras Island, NC. Kaplan saw the need for this technology and approached his childhood friend Tom Zimmerman, an IBM Research–Almaden (San Jose, CA) electrical engineer for assistance. Zimmerman designed the sensor package in 2013 as a public service commitment from IBM. Tom recruited his college buddy, Samuel Wantman a retired software designer, and they worked on developing the first phase of the design with support from IBM and from the National Park Service. Britta Muiznieks, a Biologist with the NPS has been coordinating the Parks involvement. The first phase of the project was a very quick and inexpensive hack of cell phones with a simple custom circuit board to test the viability of the project. The devices were tried in a few nests in 2013, but unfortunately it was too late in the season to get any data from viable nests. Even so, there was enough learned to make everyone believe that there was the potential to make the technology work.

Wantman took over management of the project in 2014 as Zimmerman had to return to other commitments at IBM. Additional volunteers were recruited, including David Hermeyer a retired electrical engineer and Charles Wade a retired IBM Research manager. Phase two of the project involves developing a more robust custom sensor embedded in a plastic sphere the same size as a turtle egg, with industry standard technology for transmitting data over cell phone networks. Installation has begun on multiple sensors that the NPS is funding for field testing in 2014. The project inspired Samuel Wantman to start Nerdswithoutborders.net to help organize the project, recruit volunteers, and inspire other projects. All of the Turtle Sense project members, with the exception of the NPS employees, donate their time. The Hatteras Island Ocean Center is the sponsoring non-profit institution -- administering the receiving and disbursement of funds for materials and other expenses.

==Phase One description==
[[file:PingPongSensor.jpg|right|thumb|300px|A ping-pong ball sensor assembly placed in a sea turtle nest (field tests 2013). The cable coming from the sensor leads to the communications tower for the cell phone connection.]]
For phase one, a motion and temperature sensor sealed in a ping-pong ball was placed in the sea turtle nest. It was connected to a hacked cell phone which was programmed with a very small low-powered microprocessor to send out text messages with the motion and temperature data. Turtle eggshells are thick and leathery, so the hatchlings need considerable effort to emerge from the egg. After leaving the egg, the hatchlings remain in the nest for 2-4 days before exiting as a group onto the beach. All the resulting motions should activate the accelerometer sensor and thus provide data to the phone network. Field tests done at Hatteras in 2013 were positive. The tests were done at the end of the nesting season, and unfortunately the eggs did not hatch. However, the signal from a single surviving hatchling was eight times larger than the background signal, giving hope for the extensive tests planned for 2014.

==Phase Two description==
''See also: [[Turtle Sense/Phase Two]]

Planning for phase two began during the implementation of Phase one. Samuel Wantman and David Hermeyer began working on the design for a more robust solution in the Fall of 2013. Units were installed by the NPS starting in June of 2014. We hope to install up to 20 sensors and 10 communications units through the Summer of 2014 and hopefully predict some nest hatching beforehand.

Several problems were identified during Phase One that are hopefully being addressed in Phase Two:
*The sensors had reliability problems communicating with the cell phones because of the long distance between the sensor and the microprocessor in the communications unit. This is being addressed two ways. The sensor was mounted on a very small (1 inch by 1 inch) circuit board inside the "egg" that goes in the nest. The board also contains a microprocessor and a RS485 transceiver that allows reliable communication over very long cable lengths.
[[file:PhaseTwoCommBoard.jpg|left|400px|thumb|The 2014 communications assembly contains the circuit board, power supply, a microprocessor, an M2M cell phone board and RS485 transceiver. Inset is a quarter for size reference.]]
*The cell phone, having been designed with a human interface was often unpredictable. Occasionally messages would pop-up prompting a human reply (like a notification that the phone was charging). This made programming the device difficult because all the possible messages and the timing of their appearance are not predictable. At one point the devices stopped working because the cellular service provider required all its users to upload new operating software. An appropriate user response was not possible in field installed pre-programmed units. Because of this problem, we adopted industry standard M2M (Machine to Machine) methods of sending data over a cellular network.
*Text messages and disposable cell phones were not a cost effective way to send large amounts of data. Phase two uses FTP protocols with devices and data plans that have much less expensive data charges.
*Hacked cell phones would be difficult to mass produce so the new design uses off-the-shelf plug-in cell phone boards and custom circuitry that can be mass produced.
*Phase one used single-use D cell alkaline batteries. Phase two uses rechargeable NiMH AA batteries and achieves longer battery life as the package is carefully designed for low energy needs.
*Most of the turtle-specific calculations are now done in the microprocessor embedded with the sensor in the "egg". The communication system is designed so that it can be modified for other sensors.
*The silicone filling the ping-pong balls that housed the sensors in phase one never cured. For phase two we made a casting of a ping-pong ball (which is the same size as a turtle egg), and use it to cast solid polyurethane "eggs" around the sensor circuit boards. The polyurethane is fully set in less than a day, does not out-gas, and is very hard and durable.

==Data==
[[File:Screenshot 2014-07-03 01.jpg|thumb|left|400px|Data from the first report of the 2014 season]]
The Turtle Sense units constantly monitor and analyze motion to create a profile of its magnitude over time. The motion detector measures the change in acceleration (or "jolt") multiple times per second. The magnitude of the jolt is placed on a logarithmic scale divided into 25 different ranges. The ratio between the lower and higher limit of each range is the square root of 2. A counter for each of the different ranges is incremented whenever a jolt reading is in that range. You can think of each counter as a bin. If a magnitude is in range, it is thrown into the bin for that range. After 6 minutes the results are stored in a record along with a temperature and orientation reading and a new set of bins counters is started. By looking at how many readings were in each bin, we can get an idea of what jolts occurred while the bins for that record were being filled. This allows us to compress several thousand readings into approximately 32 bytes of information. We loose precision with all the readings, and the exact sequence, but we suspect that those details are not important. The 240 records created each day give us a very good idea of what is happening in the nest.

There has been some research that indicates that before emerging from the nest in a "boil", turtles that have hatched congregate underground near the top of the nest. It is thought that this motion stimulates the hatching of the turtles that haven't yet emerged. Our sensors, situated at the top of the nest should record some large disturbances when the first turtles emerge. It is our hope that our readings will indicate these early hatchings so that we can predict that a boil is imminent.

The nests with first units installed in the 2014 season should be hatching around mid August. We will be generating algorithms to predict hatching from our data, and refining them to hopefully come up with a reliable process for predicting hatching a few days in advance.

==Funding and Impact==
[[File:NH007-Post Hurr Arthur-exclosure (2) cropped small.jpg|thumb|right|300px|A few days after the first units of Phase II were installed, Hurricane Arthur hit. The units reported regularly before and after the storm without any problems. This picture was taken the day after the storm. Notice how all the text was sandblasted off the sign in the forefront. Cape Hatteras Lighthouse is just behind the dune.]]
The National Park Service has approved funding for testing in the field beginning in June 2014. Labor is being provided by NerdsWithoutBorder.net voluteers. Additional support has come from:
* [http://ibm.com IBM -- a grant]
* [http://www.janus-rc.com/ Janus Remote Communications -- a generous discount on their M2M plug-in boards]
* [http://www.screamingcircuits.com/ Screaming Ciruits -- a donation of the labor towards the production of circuit prototypes]
* [http://www.telit.com Telit -- publicity]
* [http://www.fte.com Frontline Test Equipment, Inc -- a donation of communications testing equipment]
* [http://www.bhic.org Bald Head Island Conservancy -- funding for units at a second test location]

If the tests are successful, we will seek funding and volunteers to expand the program.

Success in this project would provide widespread, international advantages. As noted above, the stress could be lessened between the protection agencies and the desire for more ocean access by the fishing industry, recreational activities, and tourism advocates. More effective international protection will be available since the protection resources can be concentrated close to the hatch date, instead of being stretched over 6 weeks. With a tighter hatching schedule, the public would have the opportunity to observe the hatchlings heading for the sea, an observation available only randomly now. This would improve the public support of the turtles. NPS will utilize the hatch dates in on-site announcements and information centers, and the Hatteras Island Ocean Center will utilize the information in their programs. Much of the research on sea turtle eggs and hatchlings in the world could benefit from predictions of the hatch date. For example, studies which require capturing hatchlings for research could be done with much greater efficiency. The sensor/cell network could be adapted for measurements of other species, including birds. Given its modest cost and energy efficiency (long battery life) it may have other uses in environmental studies. All the design information will be available to the public on the wiki http://nerdswithoutborders.net. If the project is successful, it is the intent to make these available in the future at close to cost or less if sponsors come forward.
[[Image:Britta2013.jpg|left|300px|thumb|Britta Muiznieks, a wildlife biologist at the NPS Cape Hatteras Seashore in NC with a protected turtle nest. The 4" PVC pipe assembly tower was used in the 2013 testing. A smaller 3" structure holds the 2014 package because the electronics are smaller and AA rechargeable batteries have replaced D cells. Vandal proofing is one aspect of the design. Britta does the field research along with Eric Frey of NPS.]]

==Press==
* [http://outerbanksvoice.com/2013/08/29/high-tech-could-help-predict-sea-turtle-hatches/ Article in Outer Banks Voice (August 2013)]
* [http://online.wsj.com/article/PR-CO-20140515-910765.html Telit press release in the Wall Street Journal (May 2014)]

==Links==
*[http://www.hioceancenter.org/ Hatteras Island Ocean Center website]
*[[Turtle Sense/Work]] The main page for organizing work on the project.
*[[Turtle Sense/People]] -- People involved in this project. If you would like to help with this project, make suggestions, or offer a critique, please email admin@nerdswithoutborders.net.

User:Eric

2013-10-20T20:49:29Z

Eric:

I'm Eric Kaplan and I proposed the [[Turtle Sense]] project. I'm the founder of [http://www.hioceancenter.org Hatteras Island Ocean Center, Inc.] the host organization for the project. The Ocean Center is a 501(c)(3) organization and all donations are tax deductible.

User:Eric

2013-10-20T19:46:55Z

Eric:

I'm Eric Kaplan and I proposed the [[Turtle Sense]] project. I'm the founder of Hatteras Island Ocean Center, Inc. [http://www.hioceancenter.org] the host organization for the project. The Ocean Center is a 501(c)(3) organization and all donations are tax deductible.

User:Eric

2013-10-20T19:44:58Z

Eric: Created page with "I'm Eric Kaplan and I proposed the Turtle Sensor project. I'm the founder of Hatteras Island Ocean Center, Inc. [http://www.hioceancenter.org] the host organization for the p..."

I'm Eric Kaplan and I proposed the Turtle Sensor project. I'm the founder of Hatteras Island Ocean Center, Inc. [http://www.hioceancenter.org] the host organization for the project. The Ocean Center is a 501(c)(3) organization and all donations are tax deductible.

Turtle Sense/People

2013-10-20T19:37:45Z

Eric: /* Volunteers */

==Volunteers==
* Thomas Zimmerman [[User:Tom]], Engineering -- Phase One and Two
* Samuel Wantman [[User:Sam]], Project management, Wiki (nerdswithoutborders.net), Volunteer coordination, Phase Two software
* Eric Kaplan [[User:Eric]], Non-profit issues, Finances, Fundraising, National Park Service interface, Public relations, Liason with other turtle organizations, Catch-all
* David Hermeyer [[User:Dave]], Phase Two hardware
* Charles Wade [[User:Chuck]], Working with Eric on fund raising, checking other groups (top sail island), wiki librarian references, notes recorder
* Lou Browning -- Phase One deployment, acoustic research

==Consultants==
* Robert Harris -- Data Visualization -- [http://www.trebor.org/static/earthquake.html An example of his work using earthquake data]
* Derek Pearcy -- Web data transmission
* Mitch Altman -- Hacking community interface, production advisor

==Other Volunteers==
If you would like to help with this project, create an account and then add a link to your user page below.

Welcome

2013-10-20T14:20:38Z

Eric:

==Welcome to the Nerds-Without-Borders network==

===Who we are===

Nerds-without-borders believes that thoughtful people, acting without self interest and working collaboratively can solve many of the world's most pressing problems. We are looking for all sorts of nerds to help: Engineers, Scientists, Writers, Artists, Dreamers, Activists, Organizers, Fundraisers, Financiers, etc... It doesn't matter if you can donate a small amount of time or work full time. You define the type of work you want to do, and how much time you can commit to a project.

This network is just forming, and we would like your input to help us get going.

As we discuss how this website should be organized, and how projects should be organized, we are using a project that is already underway as a prototype. The prototype project is aimed at helping people coexist with sea turtles on the Outer Banks of North Carolina. Currently when sea turtle nests are found, the nests are monitored via daily visual inspection and an entire section of beach from the nest to the ocean is fenced off by the National Park Service, sometimes for many weeks, when the eggs might hatch. This makes it difficult for people to enjoy many activities along the beaches. The project is building a system to monitor sea turtle nests so that the National Park Service will know much more precisely -- within a day or two -- when the eggs will hatch. If we are successful, the beaches will be blocked for a much shorter time. In addition, the information about hatching nests will be made public so that the local area can develop ecotourism while helping to raise the awareness of the plight of sea turtles. It is a win-win-win-win-win scenario. Good for visitors to Cape Hatteras National Seashore, good for people who access the beach via off-read vehicle, good for the National Park Service, good for the local economy, and good for the sea turtles.

The people involved in the Sea Turtle project are varied. There are biologists, engineers, computer network specialists, etc... There are workers from the National Park Service, the private sector, and retirees. Many of the people became involved because they were friends of other people involved. Those people called on their own networks of friends and associates to help out, and some are even friends of friends of friend of friends.

All the work involved in the Sea Turtle project will be free to use for anyone who wants to use it to help protect sea turtles all over the world. The results can also be adapted for other uses as long as the results are also free for anyone to use. Any hardware created will be patent free. All software will be open-source. All data collected will be available to researchers world-wide.

We hope that we can identify more situations where a simple application of off-the-shelf technology can create win-win solutions to pressing problems. We want to identify those problems which are ignored by governments because there is no powerful constituency pushing for action, or ignored by the market-place because there is little or no money to be made.

If you are interested in helping shape how this network will function, join the discussion [[NWB:Community portal|here]]. For more information about the sea turtle project click [[Turtle Sense|here]]. If you would like to propose a project click [[NWB:Project proposals|here]]. If you would like to volunteer some of your skills and time, [http://nerdswithoutborders.net/index.php?title=Special:UserLogin&returnto=Main+Page&type=signup create a user account] and edit your user page to tell us something about yourself. Over time, we will have a system for getting people involved, but until then we will be improvising.

To cut down on spam, you MUST register as a user to edit any page or add comments to this wiki. To become a volunteer, you will have to reveal your true identity to other people working on a project. Anyone being disruptive, abusive or otherwise disagreeable will be banned from the site. We will be developing a code of expected behavior and responsibilities for participants, but until that happens (and after!) be nice.

Thanks in advance for your help.